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Omics Research // Epigenomics

Reduced Representation Bisulfite Sequencing (RRBS)

Sequence the important targets of methylation of CpG sites throughout the genome.

What Is Reduced Representation Bisulfite Sequencing (RRBS)?

RRBS is used to get a “reduced representation" of the genome, with a focus on CpG islands. The restriction enzyme is used to digest the DNA during the fragmentation step. It enables us to profile genome-wide methylation on a single nucleotide scale using a MspI restriction enzyme digestion at CpG sites.

RRBS is an alternative to whole genome bisulfite sequencing (WGBS) that requires less sequencing coverage from a single sample.

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Why Is Whole-Genome Bisulfite Sequencing Important?

RRBS enriches regions of high methylation, resulting in a focus on the regions of most interest. RRBS aids research in epigenomic-wide studies by studying the methylation status at CpG locations. It can be used to identify gene expression regulation and transcription modification that is used to identify different cell types and disease states.

Using RRBS, the methylation status of cysteine residues can be identified. The genomic region of the CpG and its function can also be identified and reported.

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What Can You Do?
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Focus Your Methylation Studies

Study areas of high methylation at CpG dinucleotides by using a restriction enzyme digestion

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Reduce Costs, Lower Sequencing Coverage

Use less raw sequencing throughput than WGBS to study the methylation that plays an important role in regulation of transcription

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Genome-Wide Studies Across Multiple Applications

Study regions of high methylation across the entire genome to inform on epigenomic changes in fields of immunology, cancer, and neuroscience

On-Going Promotions

We're always adding new deals — check in often for updated promotions!

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RRBS Best Practices

Sample Preparation & DNA Extraction

DNA extraction from cells, tissue, FFPE, blood, and swab samples

Get your high-quality genomic DNA isolated from most sample types at Psomagen, or submit your extracted genomic DNA.

Sample Requirements

250 ng genomic DNA and DIN >7.0

Library Preparation

Zymo-seq RRBS library

  • MspI restriction enzyme digestion
  • Library QC >10 nM at 150-750 bp

Sequencing Instrumentation & Read Length

Illumina NovaSeq 6000

  • 2 x 151 bp read length
  • Human - at least 30 million reads raw sequencing depth (approximately 10X average coverage of the detected CpG sites)

Bioinformatic Analysis

Basic analysis:

  • Data quality control
  • Mapping

Advanced analysis:

  • Methylation calling
  • Functional location mapping
  • Differentially methylated CpGs

Methylation-specific analyses are available.

Why Our Clients Choose Psomagen

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Superior Data Quality

Exceeds manufacturer benchmarks

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Fast Turnaround

Starting at one week for sequencing projects

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US-Based Processing

Sequencing and customer support in Rockville, MD

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Ph.D. Level Support

Expert assistance every step of the way, with real-time project updates through our online system

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Automated Workflows

Increase scalability and improve reproducibility

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CLIA-Certified, CAP-Accredited Labs

Clinical research options available (inquire for more information)

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Complete Sequencing Solutions

From extraction to data analysis, with many sample types accepted

Quotes From Our Clients

I chose Psomagen because of the price and US-based labs. We've used Psomagen before and were very satisfied. The people were responsive and helpful and the work done was very good.

Professor

University Research Laboratory

I chose Psomagen because of the price and US-based labs. We've used Psomagen before and were very satisfied. The people were responsive and helpful and the work done was very good.

Professor

University Research Laboratory

I chose Psomagen because of the price and US-based labs. We've used Psomagen before and were very satisfied. The people were responsive and helpful and the work done was very good.

Professor

University Research Laboratory

We're Ready for Your Order!

Here's what to expect in your project's life cycle. If you have a question during sequencing, it's easy to get in touch!

01

Request a Consultation

Create an account through our client portal and get in touch with your local field team to start designing a project.

We’ll help drive your research forward with the right tools for your research needs.

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Place an Order

After finalizing the scope of work, the official quote will be issued for signing. Then, your sales representative will send specific shipping instructions.

Once all the samples and necessary documents are ready, we can start your project. Need more analysis? Reach out to our bioinformatics experts to dig deeper.

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QC and Data Delivery

All Psomagen sequencing projects come with a built-in QC step to ensure you get the information you need. An account manager will update you on your project's progress in a timely manner.

You can also see some project information and securely view all valid reports on the client portal site.

Customer Publications and Other Resources

A chromosome-level reference genome and pangenome for barn swallow population genomics
Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program
First complete mitochondrial genome of the Saharan striped polecat (Ictonyx libycus)
PSO Comprehensive!

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