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Omics Research

Transcriptomics

Discover, profile, and quantify RNA transcription to understand gene expression in an organism or a single cell.

What Is Transcriptomics?

Transcriptomics is the study of RNA and its expression through sequencing, to analyze the impact of gene expression on the biology of an organism.

These analyses may include the entire transcriptome, messenger RNA, small RNAs, and non-coding RNA.

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What Is RNA Sequencing?

RNA sequencing is one of the main ways to conduct transcriptomic research (the study of RNA and its expression). With transcriptomics, researchers can sequence RNA to analyze the impact of gene expression on the biology of an organism.

These analyses may include the entire transcriptome, messenger RNA, small RNAs, and non-coding RNA.

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Why Is RNA-Seq Important?

RNA-sequencing provides a real-time snapshot of what messages are available to drive translation to protein expression. In contrast to whole exome sequencing (WES), RNA-seq enables the researcher to quantify the gene expression at that specific time the sample was collected. The impact of drug target outcomes on regulation of gene expression can be assessed at the transcription level.

In addition, drug candidates that incorporate specialized RNA molecular technologies such as siRNA, shRNA, and CRISPR must be assessed for targeted efficacy and to rule out off-target effects.

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What Can You Do?
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See Non-Coding RNA Impact

Use total RNA sequencing for the broadest scope of information.

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Detect Splice Variants

Determine how alternative splicing is affecting transcript expression.

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Regulate miRNA Expression

Use small RNA sequencing to help define which micro RNA (miRNA) species are present and impacting overall expression.

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Disease Research

Evaluate RNA-based therapies and investigate disease-related RNA changes

Transcriptomics Methods

Our available technologies, plus common applications for each type of transcriptomics research.

RNA Sequencing

  • Discover, profile, and quantify RNA transcription to understand how genes are expressed in an entire organism, specific tissue / structure, or a single cell.
  • Gain insight into the biology of a cell and how cellular changes may relate to disease.
  • Understand the impact of gene expression, alternative splicing events, gene fusions, and allele-specific expression of rare and novel messages.
  • Evaluate RNA-based therapies and disease-related RNA changes.

Single-Cell Sequencing

  • Research gene expression in individual cells in heterogeneous tissues or cell populations as well as precision genomics discovery and development.
  • We are a 10x Genomics® Certified Service Provider (CSP) for multiple single-cell sequencing technologies.

Viral RNA Sequencing

  • Identify and classify viral variants of concern, including COVID-19. Using nasal swabs and other sample types, you can identify common and novel variants.
  • Avoid dropouts (non-amplification due to mutations in primer binding regions) with our IDT® xGen™ SARS-CoV-2 Expanded Amplicon Panel, raising confidence that it will identify emerging variants.

Iso-Seq

  • Use PacBio Single Molecule, Real-Time (SMRT) technology to sequence the full length cDNA.
  • The Sequel IIe platform can be used to perform sequencing on your RNA samples, capturing many isoforms that may not be detected by standard RNA-Seq.

RNA Sequencing Best Practices

Sample Types

Prepping your sample before submission is the best way to ensure you get meaningful, accurate results. Download our sample prep guide below to learn how to package:

  • Cell pellet
  • Copan® swab
  • Formalin-fixed, paraffin-embedded tissue (FFPE)
  • Frozen tissue
  • Plasma or serum
  • Saliva
  • Stool
  • Venous whole blood
  • Viable cells

Data Delivery

In-process quality control data is sent via email when it’s available. You can also log in to your customer portal account to access the data.

Final data delivery depends on project size. Discuss your options with your sales representative. More information is available here.

Save on RNA Projects

We frequently offer deals on miRNA, mRNA, and Total RNA sequencing technologies. Check in often for updated promotions.

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We're Ready for Your Order!

Here's what to expect in your project's life cycle. If you have a question during sequencing, it's easy to get in touch!

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Request a Consultation

Create an account through our client portal and get in touch with your local field team to start designing a project.

We’ll help drive your research forward with the right tools for your research needs.

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Place an Order

After finalizing the scope of work, the official quote will be issued for signing. Then, your sales representative will send specific shipping instructions.

Once all the samples and necessary documents are ready, we can start your project. Need more analysis? Reach out to our bioinformatics experts to dig deeper.

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QC and Data Delivery

All Psomagen sequencing projects come with a built-in QC step to ensure you get the information you need. An account manager will update you on your project's progress in a timely manner.

You can also see some project information and securely view all valid reports on the client portal site.

Why Our Clients Choose Psomagen

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Superior Data Quality

Exceeds manufacturer benchmarks

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Fast Turnaround

Starting at one week for sequencing projects

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US-Based Processing

Sequencing and customer support in Rockville, MD

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Ph.D. Level Support

Expert assistance every step of the way, with real-time project updates through our online system

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Automated Workflows

Increase scalability and improve reproducibility

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CLIA-Certified, CAP-Accredited Labs

Clinical research options available (inquire for more information)

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Complete Sequencing Solutions

From extraction to data analysis, with many sample types accepted

Quotes From Our Clients

I chose Psomagen because of the price and US-based labs. We've used Psomagen before and were very satisfied. The people were responsive and helpful and the work done was very good.

Professor

University Research Laboratory

I chose Psomagen because of the price and US-based labs. We've used Psomagen before and were very satisfied. The people were responsive and helpful and the work done was very good.

Professor

University Research Laboratory

I chose Psomagen because of the price and US-based labs. We've used Psomagen before and were very satisfied. The people were responsive and helpful and the work done was very good.

Professor

University Research Laboratory

Transcriptomics in Action

Phylogenomics reveals deep relationships and diversification within phylactolaemate bryozoans
Transcriptome-wide association study and eQTL colocalization identify potentially causal genes responsible for human bone mineral density GWAS associations
Oxysterol misbalance critically contributes to Wilson disease pathogenesis
PSO Prepared!

From genome-wide analysis to single-cell specifics, we make it easy to embed transcriptomics in your discovery project planning.